seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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[FEATURE] SNP and Indel calling #242

Closed Irallia closed 1 year ago

Irallia commented 1 year ago

Rebased https://github.com/seqan/iGenVar/pull/227 -> closes #227

Resolves #31

codecov[bot] commented 1 year ago

Codecov Report

Base: 98.31% // Head: 98.35% // Increases project coverage by +0.03% :tada:

Coverage data is based on head (6574eb2) compared to base (bd586d0). Patch coverage: 97.28% of modified lines in pull request are covered.

:exclamation: Current head 6574eb2 differs from pull request most recent head eeb1a98. Consider uploading reports for the commit eeb1a98 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #242 +/- ## ========================================== + Coverage 98.31% 98.35% +0.03% ========================================== Files 20 20 Lines 1010 1155 +145 ========================================== + Hits 993 1136 +143 - Misses 17 19 +2 ``` | [Impacted Files](https://codecov.io/gh/seqan/iGenVar/pull/242?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [src/variant\_detection/method\_enums.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3ZhcmlhbnRfZGV0ZWN0aW9uL21ldGhvZF9lbnVtcy5jcHA=) | `100.00% <ø> (ø)` | | | [src/variant\_detection/variant\_detection.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3ZhcmlhbnRfZGV0ZWN0aW9uL3ZhcmlhbnRfZGV0ZWN0aW9uLmNwcA==) | `95.12% <50.00%> (-1.52%)` | :arrow_down: | | [src/variant\_detection/snp\_indel\_detection.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3ZhcmlhbnRfZGV0ZWN0aW9uL3NucF9pbmRlbF9kZXRlY3Rpb24uY3Bw) | `97.68% <97.84%> (-0.80%)` | :arrow_down: | | [include/structures/junction.hpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9zdHJ1Y3R1cmVzL2p1bmN0aW9uLmhwcA==) | `96.66% <100.00%> (+0.83%)` | :arrow_up: | | [src/iGenVar.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2lHZW5WYXIuY3Bw) | `98.58% <100.00%> (+0.05%)` | :arrow_up: | | [src/structures/junction.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3N0cnVjdHVyZXMvanVuY3Rpb24uY3Bw) | `100.00% <100.00%> (+8.00%)` | :arrow_up: | | [src/variant\_detection/variant\_output.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3ZhcmlhbnRfZGV0ZWN0aW9uL3ZhcmlhbnRfb3V0cHV0LmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/structures/debruijn\_graph.cpp](https://codecov.io/gh/seqan/iGenVar/pull/242/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3N0cnVjdHVyZXMvZGVicnVpam5fZ3JhcGguY3Bw) | `100.00% <0.00%> (+0.92%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan)

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