seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Make timer conditionally thread-safe #252

Closed eseiler closed 1 year ago

vercel[bot] commented 1 year ago

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raptor ✅ Ready (Inspect) Visit Preview 💬 Add your feedback Feb 9, 2023 at 2:34PM (UTC)
codecov[bot] commented 1 year ago

Codecov Report

Base: 92.57% // Head: 92.57% // No change to project coverage :thumbsup:

Coverage data is based on head (12d2574) compared to base (f263f08). Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #252 +/- ## ======================================= Coverage 92.57% 92.57% ======================================= Files 60 60 Lines 1939 1939 ======================================= Hits 1795 1795 Misses 144 144 ``` | [Impacted Files](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [...clude/raptor/argument\_parsing/search\_arguments.hpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9zZWFyY2hfYXJndW1lbnRzLmhwcA==) | `100.00% <ø> (ø)` | | | [include/raptor/argument\_parsing/timer.hpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy90aW1lci5ocHA=) | `85.71% <100.00%> (ø)` | | | [include/raptor/build/index\_factory.hpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYnVpbGQvaW5kZXhfZmFjdG9yeS5ocHA=) | `97.77% <100.00%> (ø)` | | | [include/raptor/search/search\_singular\_ibf.hpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3Ivc2VhcmNoL3NlYXJjaF9zaW5ndWxhcl9pYmYuaHBw) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/compute\_kmers.cpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29tcHV0ZV9rbWVycy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/construct\_ibf.cpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29uc3RydWN0X2liZi5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/insert\_into\_ibf.cpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaW5zZXJ0X2ludG9faWJmLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/prepare/compute\_minimiser.cpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3ByZXBhcmUvY29tcHV0ZV9taW5pbWlzZXIuY3Bw) | `100.00% <100.00%> (ø)` | | | [src/search/search\_partitioned\_ibf.cpp](https://codecov.io/gh/seqan/raptor/pull/252?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3NlYXJjaC9zZWFyY2hfcGFydGl0aW9uZWRfaWJmLmNwcA==) | `97.97% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan)

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