seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Minor changes that will ease the transition once we move to the HIBF library #291

Closed smehringer closed 1 year ago

smehringer commented 1 year ago

Blocked by https://github.com/seqan/chopper/pull/157

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (0bd876a) 100.00% compared to head (f2cb07d) 100.00%.

:exclamation: Current head f2cb07d differs from pull request most recent head 60e3af5. Consider uploading reports for the commit 60e3af5 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #291 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 63 62 -1 Lines 2153 2153 ========================================= Hits 2153 2153 ``` | [Impacted Files](https://codecov.io/gh/seqan/raptor/pull/291?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [src/argument\_parsing/build\_parsing.cpp](https://codecov.io/gh/seqan/raptor/pull/291?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvYnVpbGRfcGFyc2luZy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/hierarchical\_build.cpp](https://codecov.io/gh/seqan/raptor/pull/291?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaGllcmFyY2hpY2FsX2J1aWxkLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/parse\_chopper\_pack\_header.cpp](https://codecov.io/gh/seqan/raptor/pull/291?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvcGFyc2VfY2hvcHBlcl9wYWNrX2hlYWRlci5jcHA=) | `100.00% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan)

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