seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Use chopper::layout::layout::max_bin when parsing the header. #305

Closed smehringer closed 1 year ago

smehringer commented 1 year ago

Small change s.t. in the HIBF lib one can build from file OR by passing the layout records directly.

vercel[bot] commented 1 year ago

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (b423c24) 100.00% compared to head (03ec72c) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #305 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 63 63 Lines 2164 2164 ========================================= Hits 2164 2164 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/305?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [src/build/hibf/parse\_chopper\_pack\_header.cpp](https://app.codecov.io/gh/seqan/raptor/pull/305?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvcGFyc2VfY2hvcHBlcl9wYWNrX2hlYWRlci5jcHA=) | `100.00% <100.00%> (ø)` | |

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