seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] User chopper::layout::layout::user_bin in build records. #306

Closed smehringer closed 1 year ago

smehringer commented 1 year ago

This will also help to build the HIBF either from file or directly from layout records.

vercel[bot] commented 1 year ago

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (d8a3a6b) 100.00% compared to head (5d8b109) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #306 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 63 63 Lines 2164 2167 +3 ========================================= + Hits 2164 2167 +3 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [src/build/hibf/hierarchical\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaGllcmFyY2hpY2FsX2J1aWxkLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/insert\_into\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaW5zZXJ0X2ludG9faWJmLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/parse\_chopper\_pack\_line.cpp](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvcGFyc2VfY2hvcHBlcl9wYWNrX2xpbmUuY3Bw) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/read\_chopper\_pack\_file.cpp](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvcmVhZF9jaG9wcGVyX3BhY2tfZmlsZS5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/update\_user\_bins.cpp](https://app.codecov.io/gh/seqan/raptor/pull/306?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvdXBkYXRlX3VzZXJfYmlucy5jcHA=) | `100.00% <100.00%> (ø)` | |

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