seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Remove compression #311

Closed eseiler closed 1 year ago

eseiler commented 1 year ago

Follow-up: raptor upgrade for 3.0 -> 4.0/main or disable or auto decompress

vercel[bot] commented 1 year ago

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 92.30% and project coverage change: -0.24 :warning:

Comparison is base (6f105b1) 100.00% compared to head (954fad8) 99.76%.

:exclamation: Current head 954fad8 differs from pull request most recent head 644879d. Consider uploading reports for the commit 644879d to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #311 +/- ## =========================================== - Coverage 100.00% 99.76% -0.24% =========================================== Files 64 63 -1 Lines 2150 2133 -17 =========================================== - Hits 2150 2128 -22 - Misses 0 5 +5 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [...nclude/raptor/argument\_parsing/build\_arguments.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9idWlsZF9hcmd1bWVudHMuaHBw) | `100.00% <ø> (ø)` | | | [...clude/raptor/argument\_parsing/search\_arguments.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9zZWFyY2hfYXJndW1lbnRzLmhwcA==) | `100.00% <ø> (ø)` | | | [include/raptor/search/sync\_out.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3Ivc2VhcmNoL3N5bmNfb3V0LmhwcA==) | `100.00% <ø> (ø)` | | | [src/argument\_parsing/build\_parsing.cpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvYnVpbGRfcGFyc2luZy5jcHA=) | `100.00% <ø> (ø)` | | | [src/argument\_parsing/search\_parsing.cpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvc2VhcmNoX3BhcnNpbmcuY3Bw) | `100.00% <ø> (ø)` | | | [src/build/hibf/chopper\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY2hvcHBlcl9idWlsZC5jcHA=) | `100.00% <ø> (ø)` | | | [include/raptor/index.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvaW5kZXguaHBw) | `96.38% <50.00%> (-3.62%)` | :arrow_down: | | [include/raptor/build/store\_index.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYnVpbGQvc3RvcmVfaW5kZXguaHBw) | `100.00% <100.00%> (ø)` | | | [include/raptor/search/search\_singular\_ibf.hpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3Ivc2VhcmNoL3NlYXJjaF9zaW5ndWxhcl9pYmYuaHBw) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/upgrade\_parsing.cpp](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvdXBncmFkZV9wYXJzaW5nLmNwcA==) | `100.00% <100.00%> (ø)` | | | ... and [3 more](https://app.codecov.io/gh/seqan/raptor/pull/311?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | | ... and [9 files with indirect coverage changes](https://app.codecov.io/gh/seqan/raptor/pull/311/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan)

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