seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Separate layout file parsing and inititalising the build-tree. #322

Closed smehringer closed 1 year ago

vercel[bot] commented 1 year ago

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (580d102) 100.00% compared to head (2a3fb85) 100.00%.

:exclamation: Current head 2a3fb85 differs from pull request most recent head 6db8814. Consider uploading reports for the commit 6db8814 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #322 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 65 66 +1 Lines 2110 2110 ========================================= Hits 2110 2110 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/322?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [include/raptor/build/hibf/build\_data.hpp](https://app.codecov.io/gh/seqan/raptor/pull/322?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYnVpbGQvaGliZi9idWlsZF9kYXRhLmhwcA==) | `100.00% <ø> (ø)` | | | [src/build/hibf/create\_ibfs\_from\_chopper\_pack.cpp](https://app.codecov.io/gh/seqan/raptor/pull/322?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY3JlYXRlX2liZnNfZnJvbV9jaG9wcGVyX3BhY2suY3Bw) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/initialise\_build\_tree.cpp](https://app.codecov.io/gh/seqan/raptor/pull/322?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaW5pdGlhbGlzZV9idWlsZF90cmVlLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/read\_chopper\_pack\_file.cpp](https://app.codecov.io/gh/seqan/raptor/pull/322?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvcmVhZF9jaG9wcGVyX3BhY2tfZmlsZS5jcHA=) | `100.00% <100.00%> (ø)` | |

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