seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Store build_arguments in build_data. #324

Closed smehringer closed 1 year ago

smehringer commented 1 year ago

This is helpful for making the whole building independent of raptor build_arguments, since the HIBF will get its own config that will replace the raptor build arguments.

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (8ed6bda) 100.00% compared to head (1c6dbe9) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #324 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 66 66 Lines 2110 2109 -1 ========================================= - Hits 2110 2109 -1 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [include/raptor/build/hibf/build\_data.hpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYnVpbGQvaGliZi9idWlsZF9kYXRhLmhwcA==) | `100.00% <ø> (ø)` | | | [src/build/hibf/chopper\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY2hvcHBlcl9idWlsZC5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/compute\_kmers.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29tcHV0ZV9rbWVycy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/construct\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29uc3RydWN0X2liZi5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/create\_ibfs\_from\_chopper\_pack.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY3JlYXRlX2liZnNfZnJvbV9jaG9wcGVyX3BhY2suY3Bw) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/hierarchical\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaGllcmFyY2hpY2FsX2J1aWxkLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/insert\_into\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaW5zZXJ0X2ludG9faWJmLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/loop\_over\_children.cpp](https://app.codecov.io/gh/seqan/raptor/pull/324?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvbG9vcF9vdmVyX2NoaWxkcmVuLmNwcA==) | `100.00% <100.00%> (ø)` | |

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