seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] HIBF building via std::function #330

Closed smehringer closed 1 year ago

smehringer commented 1 year ago

from Simon

vercel[bot] commented 1 year ago

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eseiler commented 1 year ago
codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 97.05% and project coverage change: -0.05 :warning:

Comparison is base (9299b36) 100.00% compared to head (8918d4a) 99.95%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #330 +/- ## =========================================== - Coverage 100.00% 99.95% -0.05% =========================================== Files 66 65 -1 Lines 2109 2109 =========================================== - Hits 2109 2108 -1 - Misses 0 1 +1 ``` | [Impacted Files](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [include/raptor/build/hibf/build\_data.hpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYnVpbGQvaGliZi9idWlsZF9kYXRhLmhwcA==) | `100.00% <ø> (ø)` | | | [src/build/hibf/chopper\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY2hvcHBlcl9idWlsZC5jcHA=) | `96.55% <94.44%> (-3.45%)` | :arrow_down: | | [src/build/hibf/compute\_kmers.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29tcHV0ZV9rbWVycy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/construct\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvY29uc3RydWN0X2liZi5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/hierarchical\_build.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaGllcmFyY2hpY2FsX2J1aWxkLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/insert\_into\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvaW5zZXJ0X2ludG9faWJmLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/loop\_over\_children.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvbG9vcF9vdmVyX2NoaWxkcmVuLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/build/hibf/update\_parent\_kmers.cpp](https://app.codecov.io/gh/seqan/raptor/pull/330?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2J1aWxkL2hpYmYvdXBkYXRlX3BhcmVudF9rbWVycy5jcHA=) | `100.00% <100.00%> (ø)` | |

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