seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[FEATURE] Improved timing output #392

Closed eseiler closed 1 year ago

eseiler commented 1 year ago

Resolves #391

Index size and RAM are always KiB in the timing-output

Todo:

column -ts $'\t' times.tsv

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codecov[bot] commented 1 year ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (0b115fa) 100.00% compared to head (c12d1b8) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #392 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 48 51 +3 Lines 1689 1753 +64 ========================================= + Hits 1689 1753 +64 ``` | [Files](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [...nclude/raptor/argument\_parsing/formatted\_bytes.hpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9mb3JtYXR0ZWRfYnl0ZXMuaHBw) | `100.00% <100.00%> (ø)` | | | [...e/raptor/argument\_parsing/formatted\_index\_size.hpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9mb3JtYXR0ZWRfaW5kZXhfc2l6ZS5ocHA=) | `100.00% <100.00%> (ø)` | | | [include/raptor/argument\_parsing/memory\_usage.hpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9tZW1vcnlfdXNhZ2UuaHBw) | `100.00% <100.00%> (ø)` | | | [...clude/raptor/argument\_parsing/search\_arguments.hpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9zZWFyY2hfYXJndW1lbnRzLmhwcA==) | `100.00% <ø> (ø)` | | | [src/argument\_parsing/build\_arguments.cpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvYnVpbGRfYXJndW1lbnRzLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/build\_parsing.cpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvYnVpbGRfcGFyc2luZy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/search\_arguments.cpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvc2VhcmNoX2FyZ3VtZW50cy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/search\_parsing.cpp](https://app.codecov.io/gh/seqan/raptor/pull/392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvc2VhcmNoX3BhcnNpbmcuY3Bw) | `100.00% <100.00%> (ø)` | |

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