seqan / raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[MISC] Add complete search and cpu timer #400

Closed eseiler closed 10 months ago

vercel[bot] commented 10 months ago

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raptor ✅ Ready (Inspect) Visit Preview 💬 Add feedback Nov 2, 2023 3:33pm
codecov[bot] commented 10 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (cf2d859) 100.00% compared to head (1fbec7e) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #400 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 50 51 +1 Lines 1605 1675 +70 ========================================= + Hits 1605 1675 +70 ``` | [Files](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan) | Coverage Δ | | |---|---|---| | [include/raptor/argument\_parsing/cpu\_time.hpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9jcHVfdGltZS5ocHA=) | `100.00% <100.00%> (ø)` | | | [...clude/raptor/argument\_parsing/search\_arguments.hpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3IvYXJndW1lbnRfcGFyc2luZy9zZWFyY2hfYXJndW1lbnRzLmhwcA==) | `100.00% <ø> (ø)` | | | [include/raptor/search/search\_singular\_ibf.hpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-aW5jbHVkZS9yYXB0b3Ivc2VhcmNoL3NlYXJjaF9zaW5ndWxhcl9pYmYuaHBw) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/build\_arguments.cpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvYnVpbGRfYXJndW1lbnRzLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/argument\_parsing/search\_arguments.cpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL2FyZ3VtZW50X3BhcnNpbmcvc2VhcmNoX2FyZ3VtZW50cy5jcHA=) | `100.00% <100.00%> (ø)` | | | [src/search/raptor\_search.cpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3NlYXJjaC9yYXB0b3Jfc2VhcmNoLmNwcA==) | `100.00% <100.00%> (ø)` | | | [src/search/search\_partitioned\_ibf.cpp](https://app.codecov.io/gh/seqan/raptor/pull/400?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=seqan#diff-c3JjL3NlYXJjaC9zZWFyY2hfcGFydGl0aW9uZWRfaWJmLmNwcA==) | `100.00% <100.00%> (ø)` | |

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