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seqcode / Bichrom

Interpretable bimodal network for transcription factors binding site prediction
MIT License
6 stars 4 forks source link

Hdf5convert #7

Closed yztxwd closed 2 years ago

yztxwd commented 2 years ago

HDF5 dataset to enable easy storage and speed up training

  1. Add script to store the train/val/test datasets built by construct_data.py in HDF5 format
  2. Adjust function parameters in training script to fit HDF5 input, including:
    • A new parameter for run_bichrom.py to accept HDF5 dataset input
    • HDF5 file parameter for functions that read data