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seqcode / pegr

Platform for Eukaryotic Genome Regulation
MIT License
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Download change based on Galaxy file extensions #332

Closed WilliamKMLai closed 1 week ago

WilliamKMLai commented 1 week ago

Galaxy handles streaming non-BAM files differently and we'll need to modify the stored URLs

  1. fastq files should be stream-edited from: https://hyperion.cac.cornell.edu/datasets/XXXXXX/display?preview=False to https://hyperion.cac.cornell.edu/datasets/XXXXXX/display?to_ext=fastqsanger.gz

  2. FASTQ output should be modified from .fastq to .fastq.gz

  3. bigWig files should be stream-edited from: https://hyperion.cac.cornell.edu/datasets/XXXXXX/display?preview=False to https://hyperion.cac.cornell.edu/datasets/XXXXXX/display?to_ext=bigwig

dshao commented 1 week ago

This is hard-coded for now. It might not be needed in the future when the urls received by PEGR are already in the correct format.