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seqeralabs / nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
https://seqera.io/
Mozilla Public License 2.0
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Update tower CLI container image to use 0.9.2 #20

Closed ejseqera closed 6 months ago

ejseqera commented 6 months ago

For GCP runs, the SEQERA_RUNS_DUMP process will fail. The current version of the Tower CLI being used for this process (v0.9.0) will fail with the following error Java runtime reflection error reported previously here. 

Exception in thread "main" org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively invoke method public void io.seqera.tower.model.GoogleBatchConfig.setWaveEnabled(java.lang.Boolean) without it being registered for runtime reflection. Add it to the reflection metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#reflection for help.
    at org.graalvm.nativeimage.builder/com.oracle.svm.core.reflect.MissingReflectionRegistrationUtils.forQueriedOnlyExecutable(MissingReflectionRegistrationUtils.java:97)
    at java.base@17.0.8/java.lang.reflect.Method.acquireMethodAccessor(Method.java:77)
    at java.base@17.0.8/java.lang.reflect.Method.invoke(Method.java:566)
    at com.fasterxml.jackson.databind.deser.impl.MethodProperty.deserializeAndSet(MethodProperty.java:141)
    at com.fasterxml.jackson.databind.deser.BeanDeserializer.vanillaDeserialize(BeanDeserializer.java:288)
    at com.fasterxml.jackson.databind.deser.BeanDeserializer._deserializeOther(BeanDeserializer.java:189)
    at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserialize(BeanDeserializer.java:161)
    at com.fasterxml.jackson.databind.jsontype.impl.AsPropertyTypeDeserializer._deserializeTypedForId(AsPropertyTypeDeserializer.java:130)
    at com.fasterxml.jackson.databind.jsontype.impl.AsPropertyTypeDeserializer.deserializeTypedFromObject(AsPropertyTypeDeserializer.java:97)
    at com.fasterxml.jackson.databind.deser.AbstractDeserializer.deserializeWithType(AbstractDeserializer.java:254)

This has been fixed in v0.9.2.