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seqeralabs / nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
https://seqera.io/
Mozilla Public License 2.0
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Gantt plotting container needs ps for singularity #24

Closed pinin4fjords closed 6 months ago

pinin4fjords commented 6 months ago

Running with singularity results in:

    INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
    INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
    Command 'ps' required by nextflow to collect task metrics cannot be found