seqeralabs / nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

https://seqera.io/

Mozilla Public License 2.0

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Seqera containers: POC 3 #45

Open ewels opened 4 months ago

ewels commented 4 months ago

Seqera Containers: Proof of concept No. 3

Hardcode container URIs at module level.

Workflow for generating:

Keep conda spec in modules up to date
When something changes, run the Wave CLI to fetch new container URIs and update module files
- Either with some CI / nf-core tools code. Or using Renovate?
- [Maybe?] Remove the registry base, as this is set in the pipeline nextflow.config

Workflow for usage: (Identical to current usage)

Online
- Use nextflow run -profile docker or singularity, arm etc. (profile names up for refinement). Same as current.
Offline
- Use nf-core download as done currently, no change needed.

ewels commented 4 months ago

Tried to set the base registry, not 100% how it works with the /library/ bit, so treat that with a grain of salt.