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seqeralabs / nf-sentieon

POC Nextflow pipeline to run Sentieon software
Mozilla Public License 2.0
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Use public Docker container for Sentieon #5

Closed drpatelh closed 2 years ago

drpatelh commented 2 years ago

Description of feature

Packaging the software in a container will be vital for portability. I built a local Docker image from here as instructed but I had to manually add in the dependency below here because it is required within the container by Nextflow:

RUN apt-get update && apt-get install -y procps
drpatelh commented 2 years ago

We have obtained permission (cc @DonFreed) to host the Sentieon containers on nf-core Dockerhub. I have pushed the latest version available in the sentieon-docker repo to Dockerhub with the 202112.02 and latest tags: https://hub.docker.com/repository/docker/nfcore/sentieon

The container definitions in the pipeline have been updated in https://github.com/seqeralabs/nf-sentieon/commit/ac68a40ab73bceb5097df47cc694131715c3b246

We (I) can push new versions of these containers manually for now as it isn't too much effort.