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seqeralabs / nf-tower

Nextflow Tower system
https://tower.nf
Mozilla Public License 2.0
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Tower request field `tasks.script` exceeds expected size #349

Open Z-Zen opened 2 years ago

Z-Zen commented 2 years ago

Hello,

I am running Nextflow Tower on our server and the pipeline gave away the error Tower request field 'tasks.script' exceeds expected size. Does it seem that Tower could not store the whole script block in the database? if that's the case, what parameter should be changed to resolve this issue?

Thanks in advance.

pditommaso commented 2 years ago

The only workaround is to make the script smaller. Putting into a separate Bash is an easy solution

BrunoGrandePhD commented 2 years ago

@pditommaso: This appears as a warning rather than an error. What's the potential consequence?

pditommaso commented 2 years ago

The only side effect is that the task script stored into tower is not complete

rcannood commented 1 year ago

Hello all!

Would it be possible not to print the entire script when this warning message occurs? The warning message exceeds the expected size :)

tverbeiren commented 1 year ago

@pditommaso I'm with @rcannood on this one. A warning and a pointer to the process/script should suffice, no?

The current warning makes it so much harder to interpret console output during a pipeline run.