Open nick-youngblut opened 1 year ago
I'm getting the same [StackOverflowError]
for another pipeline that I am trying to launch via the nf-towar launchpad. This other pipeline has a main.nf
file in the master branch, so that isn't the issue. The error:
The workflow execution failed to start. Exit status: 1
Essential container in task exited
Downloading plugin nf-amazon@1.11.3
N E X T F L O W ~ version 22.10.6
Pulling MY_ORGANIZATION/MY_PIPELINE2 ...
downloaded from https://github.com/MY_ORGANIZATION/MY_PIPELINE2.git
Launching `https://github.com/MY_ORGANIZATION/MY_PIPELINE2` [voluminous_euclid] DSL2 - revision: ff50f264b3 [master]
Downloading plugin nf-wave@0.5.3
Unexpected error [StackOverflowError]
I don't know what to do in regards to troubleshooting, given the ambiguous error message: Unexpected error [StackOverflowError]
I'm updating a pipeline in which the master branch does not include a
main.nf
file, but mydev
branch does include amain.nf
file. I'm specifying my branch in theRevision number
field in nf-tower Launchpad. I was successfully able to add the pipeline to my launchpad, but now when I try to update the pipeline (e.g., change the config profiles), I get the error:When I try to "launch" (run) the pipeline in nf-tower, I get the following error:
I'm guessing that these 2 issues are related. It seems that nf-tower doesn't work on the edge case where the repo master branch does not contain a
main.nf
file.