I have setup my nextflow pipeline similar to many nf-core pipelines (e.g., nf-core/mag), in which there is one main config file in the base directory of my repo (nextflow.config), and this config includes other config files stored in $REPO_BASE_DIR/conf/ via the includeConfig operator.
In other words:
nextflow.config
./conf/utils.config
...with includeConfig 'conf/utils.config' in the nextflow.config file.
When I launch the pipeline on nf-tower, I reproducibility get the following error:
The workflow execution failed to start. Exit status: 1
Essential container in task exited
Downloading plugin nf-amazon@1.11.3
N E X T F L O W ~ version 22.10.6
Pulling MY_ORGANIZATION/MY_PIPELINE ...
downloaded from https://github.com/MY_ORGANIZATION/MY_PIPELINE.git
No such file: Config file does not exist: https://api.tower.nf/ephemeral/config/utils.config
I have setup my nextflow pipeline similar to many nf-core pipelines (e.g., nf-core/mag), in which there is one main config file in the base directory of my repo (
nextflow.config), and this config includes other config files stored in$REPO_BASE_DIR/conf/via theincludeConfigoperator.In other words:
...with
includeConfig 'conf/utils.config'in thenextflow.configfile.When I launch the pipeline on nf-tower, I reproducibility get the following error: