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seqeralabs / nf-tower

Nextflow Tower system
https://tower.nf
Mozilla Public License 2.0
144 stars 51 forks source link

Staging folder vs file path conflict #388

Open nmahieu-empresstx opened 1 year ago

nmahieu-empresstx commented 1 year ago

Hi all - is this a bug or known behavior.

When using tower to stage a file from S3 - if there is s3://bucket/file.csv and s3://bucket/file.csv/ (a file and a folder) specifying s3://bucket/file.csv will stage the folder and not the file.

nmahieu-empresstx commented 1 year ago

Nf version- 23.04.1 build 5866 Tower version- 23.2.0-cycle09_440df6e