[v0] Deploy process :(

[otiai10]

1. docker-machine create x2
   • check ssh connection to both

[otiai10]

step1. VPC

• make sure using DNS hostnames to enable EFS hostname resolving

[otiai10]

step2. InternetGateway

create and attach to that VPC

[otiai10]

step3. Route Table of VPC

↑this is not correct!!!

Destination should be 0.0.0.0/0 to make it open to the Internet

[otiai10]

step4. Subnet

it must be inside a AZ

[otiai10]

step5. Create Machine: app

% docker-machine create --driver amazonec2 \
--amazonec2-region ap-southeast-2 \
--amazonec2-vpc-id vpc-f4bec590 \
--amazonec2-subnet-id subnet-f31e1c97 \
--amazonec2-security-group seqpod-app \
--amazonec2-instance-type t2.micro \
--engine-install-url=https://releases.rancher.com/install-docker/1.13.sh \
aws-seqpod-app

Running pre-create checks...
Creating machine...
(aws-seqpod-app) Launching instance...
Waiting for machine to be running, this may take a few minutes...
Detecting operating system of created instance...
Waiting for SSH to be available...
Detecting the provisioner...
Provisioning with ubuntu(systemd)...
Installing Docker...
Copying certs to the local machine directory...
Copying certs to the remote machine...
Setting Docker configuration on the remote daemon...
Checking connection to Docker...
Docker is up and running!
To see how to connect your Docker Client to the Docker Engine running on this virtual machine, run: docker-machine env aws-seqpod-app
%

[otiai10]

step6. Create Machine: worker

% docker-machine create --driver amazonec2 \
--amazonec2-region ap-southeast-2 \
--amazonec2-vpc-id vpc-f4bec590 \
--amazonec2-subnet-id subnet-f31e1c97 \
--amazonec2-security-group seqpod-worker \
--amazonec2-instance-type m4.xlarge \
--engine-install-url=https://releases.rancher.com/install-docker/1.13.sh \
aws-seqpod-worker

Running pre-create checks...
Creating machine...
(aws-seqpod-worker) Launching instance...
Waiting for machine to be running, this may take a few minutes...
Detecting operating system of created instance...
Waiting for SSH to be available...
Detecting the provisioner...
Provisioning with ubuntu(systemd)...
Installing Docker...
Copying certs to the local machine directory...
Copying certs to the remote machine...
Setting Docker configuration on the remote daemon...
Checking connection to Docker...
Docker is up and running!
To see how to connect your Docker Client to the Docker Engine running on this virtual machine, run: docker-machine env aws-seqpod-worker
%

[otiai10]

step7. Fix Security Group

seqpod-app

seqpod-worker

is the IP Address of our laboratory

[otiai10]

step8. Setup EFS

1. create Security Group for FS
2. create FS instance
3. sudo apt-get install -y nfs-common && mount
   • from both App and Worker

• /var/app/works: where resources and results located
• /var/app/reference: where references located
  • don't forget to place reference directory under /var/app/reference

Therefore,

• mount remote.efs.host:/ /var/app

ubuntu@aws-seqpod-app:~$ sudo chmod o+rw /var/app

[otiai10]

step9. place certs of worker, on app machine

ubuntu@aws-seqpod-app:~$ sudo mkdir /var/machine
ubuntu@aws-seqpod-app:~$ sudo chmod a+rw /var/machine

% docker-machine scp -r ~/.docker/machine/machines/aws-seqpod-worker aws-seqpod-app:/var/machine

[otiai10]

should be something else... 👎

[otiai10]

Shutting down and cleaning up

1. [console] Terminate 2 instances
2. [console] Terminate EFS
3. [local] docker-machine rm 2 machines
4. [console] Delete VPC