Closed ddesvillechabrol closed 1 year ago
####################################################### # sofware__choice = ["atropos", "cutadapt", "fastp"] trimming: software_choice: fastp do: false
MissingInputException in line 351 of /pasteur/zeus/projets/p02/Biomics/Bioinfo/InProgress/B6766/analysis/rnaseq/rnaseq.rules: Missing input files for rule sample_rRNA: D080322_N_CD4_TCR_100_S2/fastp/D080322_N_CD4_TCR_100_S2_R1_.fastp.fastq.gz
Indeed, syntax error and issues with other trimming tools such as cutadapt and atropos. All fixed in future PR https://github.com/sequana/rnaseq/pull/31