bowtie2_mapping (and other rules) are dynamic rules. This means that we can use them several
times in a pipeline. To do so, we must set their name as follows:
So here the actual rule is called bowtie2_mapping_ref. However, in the rule itself, the expected name in the configuration file is bowtie2_mapping. Therefore, the config file should bowtie2_mapping and not bowtie2_mapping_ref./
bowtie2_mapping (and other rules) are dynamic rules. This means that we can use them several times in a pipeline. To do so, we must set their name as follows:
So here the actual rule is called bowtie2_mapping_ref. However, in the rule itself, the expected name in the configuration file is bowtie2_mapping. Therefore, the config file should bowtie2_mapping and not bowtie2_mapping_ref./