serenejiang / q2_dsfdr

BSD 3-Clause "New" or "Revised" License
0 stars 6 forks source link

dsfdr error #4

Open rkmandal1 opened 6 years ago

rkmandal1 commented 6 years ago

I am getting the following error while using dsfdr plugin in qiime2-2017.12. Command is as follows-

qiime dsfdr permutation-fdr --i-table table.qza --m-metadata-file metadata.tsv --m-metadata-category MStatus --output-dir test-dsFDR

Plugin error from dsfdr:

'module' object is not callable

Debug info has been saved to /var/folders/64/58fk04bx2335w895j8x608080000gn/T/qiime2-q2cli-err-tx3k5t3k.log

and log file looks like this-

Traceback (most recent call last): File "/Users/Schmidtlab/anaconda3/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 224, in call results = action(arguments) File "", line 2, in permutation_fdr File "/Users/Schmidtlab/anaconda3/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/sdk/action.py", line 228, in bound_callable output_types, provenance) File "/Users/Schmidtlab/anaconda3/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/sdk/action.py", line 363, in _callableexecutor output_views = self._callable(view_args) File "/Users/Schmidtlab/anaconda3/envs/qiime2-2017.12/lib/python3.5/site-packages/q2_dsfdr/plugin_setup.py", line 40, in permutation_fdr alpha, permutations) TypeError: 'module' object is not callable

Please let me know.

Thanks, Rabindra

serenejiang commented 6 years ago

@rkmandal1 We have fixed the errors in the plug-in; it should be ready to be used now. Please check the demo notebook. Thanks!