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serenolopezdarwin / apanalysis

Analyze 3'UTR usage in single-cell data.
MIT License
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Can not find differentialpasanalysis.R #1

Closed requiem116 closed 3 years ago

requiem116 commented 3 years ago

Thanks for sharing the pipeline of analysis. I am trying to custom this pipeline to apply on our data. In the pasanalysis_workflow.sh, differentialpasanalysis.R is excuted. But I can not find in this repository. Am I missing something?

serenolopezdarwin commented 3 years ago

This is a deprecated reference, differential PAS analysis is now handled within the script 'matrixlengthandisoformanalysis.py'

Thanks for the notice, I've removed references to the deprecated script.