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sergivalverde / sub-cortical_segmentation

Sub-cortical brain tissue segmentation using CNN
BSD 3-Clause "New" or "Revised" License
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Questions on Data Sets #4

Open wanglinwangyinuo opened 5 years ago

wanglinwangyinuo commented 5 years ago

I use the IBSR dataset as input, but there are problems.: --> loading weights from /home/wanglin/sub-cortical_segmentation-master/nets/IBSR/IBSR.pkl --> registering priors for scan T1.nii Traceback (most recent call last): File "train_model.py", line 77, in t = test_scan(net, t1, options) File "/home/wanglin/sub-cortical_segmentation-master/cnn_cort/base.py", line 421, in test_scan for batch_axial, batch_cor, batch_sag, atlas, centers in load_patch_batch(test_scan, options): File "/home/wanglin/sub-cortical_segmentation-master/cnn_cort/base.py", line 364, in load_patch_batch t = register_masks(scan_name) File "/home/wanglin/sub-cortical_segmentation-master/cnn_cort/base.py", line 538, in register_masks s_atlas[:,:,:,st] = r_tmp_atlas.get_data().astype(np.float32) ValueError: could not broadcast input array from shape (256,256,128) into shape (256,256,128,15)

And the IBSR. pkl folder is empty, I don't know why.

wanglinwangyinuo commented 5 years ago

Can you send us the data set of MICCAI 2012? I can't find it online. Thank you very much.