sergiyayf / PhysiLearning

Reinforcement Learning repo for PhysiCell adaptive therapy
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Slurm job steps resource allocation #18

Closed sergiyayf closed 1 year ago

sergiyayf commented 1 year ago

Currently slurm job steps do not work properly, so initially, steps are nicely distributed between the workers, but later resource allocation becomes weird. Need to fix that with the --exclusive option, and potentially to only run one job step of PhysiCell running shell script and then within that shell script to be calling physicell every time it needs to restart.

sergiyayf commented 1 year ago

Implemented new method in PcEnv to start simulation, that will call srun and just calling PhysiCell inside it