make test errors

[kbrevs]

Hey - I'm getting these errors when running make test:

PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/.t t/00-load.t ........ 1/3 # Testing HMMER2GO 0.17.2, Perl 5.022001, /usr/bin/perl t/00-load.t ........ ok
t/01-fetchmap.t .... ok
t/02-getorf.t ...... ok
t/03-run.t ......... ok
t/04-mapterms.t .... ok
t/05-map2gaf.t ..... ok
t/06-pfamsearch.t .. 1/10 Use of uninitialized value $dbnum in concatenation (.) or string at /home/beetle/Downloads/hmmer2go/HMMER2GO-0.17.2/blib/lib/HMMER2GO/Command/pfamsearch.pm line 94. t/06-pfamsearch.t .. 2/10

Failed test 'Found the correct number of HMMs for the search term'

at t/06-pfamsearch.t line 39.

got: undef

expected: '7'

Failed test 'Found the HMMs in the correct number of databases'

at t/06-pfamsearch.t line 40.

got: undef

expected: '4'

Failed test 'Wrote the correct number of descriptions to the output file'

at t/06-pfamsearch.t line 51.

got: undef

expected: '10'

Use of uninitialized value $dbnum in concatenation (.) or string at /home/beetle/Downloads/hmmer2go/HMMER2GO-0.17.2/blib/lib/HMMER2GO/Command/pfamsearch.pm line 89. t/06-pfamsearch.t .. 6/10

Failed test 'Fetched the correct number of HMMs for the search term'

at t/06-pfamsearch.t line 61.

got: undef

expected: '10'

Use of uninitialized value $hmmnum in addition (+) at t/06-pfamsearch.t line 64.

Looks like you planned 10 tests but ran 7.

Looks like you failed 4 tests of 7 run.

Looks like your test exited with 255 just after 7.

t/06-pfamsearch.t .. Dubious, test returned 255 (wstat 65280, 0xff00) Failed 7/10 subtests t/07-customdb.t .... ok

Test Summary Report

t/06-pfamsearch.t (Wstat: 65280 Tests: 7 Failed: 4) Failed tests: 2-3, 5, 7 Non-zero exit status: 255 Parse errors: Bad plan. You planned 10 tests but ran 7. Files=8, Tests=51, 36 wallclock secs ( 0.06 usr 0.01 sys + 13.57 cusr 2.41 csys = 16.05 CPU) Result: FAIL Failed 1/8 test programs. 4/51 subtests failed. Makefile:891: recipe for target 'test_dynamic' failed make: *** [test_dynamic] Error 255

Thanks,

[sestaton]

Thanks for the report, I've marked it a bug and will look into it.

[sestaton]

Could you give it another try with the updates I've applied to the master branch? I'll make a new release shortly.

[kbrevs]

Looks like that fixed it! Thanks.