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sestaton / HMMER2GO

Annotate DNA sequences for Gene Ontology terms
MIT License
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installation error #31

Open amoltej opened 2 years ago

amoltej commented 2 years ago

Hi, I am seeing following error after running make test command

PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/00-load.t ........ 1/3 # Testing HMMER2GO 0.18.3, Perl 5.030000, /usr/bin/perl t/00-load.t ........ ok t/01-fetchmap.t .... ok t/02-getorf.t ...... ok t/03-run.t ......... ok t/04-mapterms.t .... ok t/05-map2gaf.t ..... ok t/06-pfamsearch.t .. 2/10 # Failed test 'Found the correct number of HMMs for the search term # at t/06-pfamsearch.t line 40. # got: undef # expected: '103'

# Failed test 'Found the HMMs in the correct number of databases' # at t/06-pfamsearch.t line 41. # got: undef # expected: '4'

# Failed test 'Output file of descriptions produced # at t/06-pfamsearch.t line 43. Can't open 't/hmmer2go_test_termsearch.out' for reading: 'No such file or directory' at t/06-pfamsearch.t line 46 # Looks like your test exited with 255 just after 4. t/06-pfamsearch.t .. Dubious, test returned 255 (wstat 65280, 0xff00) Failed 9/10 subtests t/07-customdb.t .... 2/5 # Failed test 'Expected HMM database created # at t/07-customdb.t line 30.

# Failed test 'Expected raw output of HMMscan from hmmer2go search # at t/07-customdb.t line 35.

# Failed test 'Expected domain table output of HMMscan from hmmer2go search # at t/07-customdb.t line 36.

# Failed test 'Expected hit table output of HMMscan from hmmer2go search # at t/07-customdb.t line 37. # Looks like you failed 4 tests of 5. t/07-customdb.t .... Dubious, test returned 4 (wstat 1024, 0x400) Failed 4/5 subtests

Test Summary Report ------------------- t/06-pfamsearch.t (Wstat: 65280 Tests: 4 Failed: 3) Failed tests: 2-4 Non-zero exit status: 255 Parse errors: Bad plan. You planned 10 tests but ran 4. t/07-customdb.t (Wstat: 1024 Tests: 5 Failed: 4) Failed tests: 2-5 Non-zero exit status: 4 Files=8, Tests=54, 30 wallclock secs ( 0.04 usr 0.02 sys + 10.75 cusr 5.54 csys = 16.35 CPU) Result: FAIL Failed 2/8 test programs. 7/54 subtests failed. make: *** [Makefile:900: test_dynamic] Error 4

can someone please explain how to resolve this issue?

Thanks Amol

LeandroD94 commented 9 months ago

Hi! I'm experiencing the same error and I can't solve it. NB: I needed to download and configure the bins instead of the docker image...

Thanks, Leandro