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sestaton / tephra

A tool for discovering transposable elements and describing patterns of genome evolution
MIT License
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Refactor fragment search to not store files for each contig #23

Closed sestaton closed 6 years ago

sestaton commented 6 years ago

The current approach might create too many open files for draft genomes. Need to refactor so we process contigs in chunks rather than leaving all the intermediate files on disk until after the GFF3 is produced.

sestaton commented 6 years ago

This is resolved and added in v0.09.7.