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settylab
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atac_metacell_utilities
Snakemake pipeline for scATAC metacell utilities such as primed and lineage specific scores, chromVAR, in-silico ChIP
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In silico CHIP chromVAR scores are not returning most TFs
#20
Connorr0
opened
4 months ago
0
tqdm missing from environment.yaml
#19
Connorr0
opened
4 months ago
0
Links between the rules peak_tf and compute_ins_chip non-existent
#18
Connorr0
opened
4 months ago
0
AttributeError: module 'SEACells' has no attribute 'genescores'
#17
Connorr0
opened
4 months ago
0
missing package BSgenome.Hsapiens.UCSC.hg38
#16
Connorr0
opened
4 months ago
1
Gene by tf matrix update
#15
Huangy57
closed
1 year ago
0
Update README.md with Mellon citation
#14
jordanc17
closed
1 year ago
0
Bump certifi from 2023.5.7 to 2023.7.22 in /envs
#13
dependabot[bot]
closed
1 year ago
1
Update README.md with Mellon citation
#12
jordanc17
closed
1 year ago
0
Revamp of repository for supporting primed and lineage accessibility scores
#11
ManuSetty
closed
1 year ago
0
Merge updates for mellon manuscript into main
#10
jordanc17
closed
1 year ago
0
update fimo rm to handle file not existing
#9
jordanc17
closed
1 year ago
0
Enhancer plot
#8
katosh
opened
1 year ago
6
fix bug in order of setting file paths and printing them to user
#7
jordanc17
closed
1 year ago
0
Insilico chip
#6
christinedien
closed
1 year ago
0
Make `atac_ad` optional for `peak_tf`
#5
ManuSetty
closed
2 years ago
6
Peak names in `peak_x_tf.h5ad` and `atac_ad`
#4
ManuSetty
closed
2 years ago
2
Expose SEACell_label in config.yaml
#3
ManuSetty
closed
2 years ago
2
Additional functionality
#2
ManuSetty
closed
2 years ago
9
Suggested enhancements
#1
ManuSetty
closed
2 years ago
4