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seung-lab
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chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
https://pychunkflow.readthedocs.io/en/latest/
Apache License 2.0
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Outdated inference.sh script in the examples
#305
wzz332
opened
1 month ago
0
fix: update viewer to new microviewer dependency
#304
william-silversmith
closed
4 months ago
0
fix load_png_images to use bounding box starts & stops
#303
eschombu
closed
8 months ago
1
add 1-dim probability map shader to chunkflow neuroglancer command
#302
eschombu
closed
8 months ago
1
fix volume_size param in create-info command for multichannel case
#301
eschombu
closed
8 months ago
1
Have gaussian_filter plugin operate on copy of input so it does not modify it in-place
#300
eschombu
closed
8 months ago
0
BoundingBox.decompose fix (plus some other minor changes)
#299
eschombu
closed
8 months ago
0
skeleton visualization in neuroglancer is not working
#298
xiuliren
opened
11 months ago
0
switch to zarr
#297
xiuliren
opened
11 months ago
0
load skeleton operator
#296
xiuliren
closed
11 months ago
0
Fastapi
#295
xiuliren
closed
1 year ago
0
Shrink operators, remove cloud-watch to plugin
#294
xiuliren
closed
1 year ago
0
add skip-task-by-blocks-in-volume
#293
xiuliren
closed
1 year ago
0
additional static layer in neuroglancer
#292
xiuliren
opened
1 year ago
0
[feature] skip existing chunks in a precomputed volume
#291
xiuliren
closed
1 year ago
1
Test time augmentation
#290
xiuliren
closed
1 year ago
0
napari viewer operator
#289
xiuliren
closed
1 year ago
0
remove the inheritance of Bbox from CloudVolume
#288
xiuliren
closed
1 year ago
1
refactor volume
#287
xiuliren
closed
1 year ago
0
initial implementation, single initiator works but only the last one …
#286
xiuliren
opened
1 year ago
0
move rarely used operators to plugins
#285
xiuliren
opened
1 year ago
0
rename bbox to roi
#284
xiuliren
opened
1 year ago
0
Test time augmentation
#283
xiuliren
closed
1 year ago
0
add load zarr plugin
#282
xiuliren
closed
1 year ago
1
feat: allow inference beyond mip 3
#281
macrintr
opened
2 years ago
1
Load mrc
#280
xiuliren
closed
2 years ago
0
reading using tensorstore is working
#279
xiuliren
closed
2 years ago
0
perform IO using tensorstore
#278
xiuliren
closed
1 year ago
1
[Feature] async patch provider
#277
xiuliren
opened
2 years ago
0
Test time augmentation
#276
xiuliren
closed
2 years ago
0
support IO of Zar format
#275
xiuliren
closed
1 year ago
2
Need the dependency pandas<1.4
#274
JackieZhai
closed
2 years ago
2
input-patch-size etc in setup_env
#273
ranlu
closed
2 years ago
3
add operator of download-mesh
#272
xiuliren
closed
2 years ago
0
bounding box coordinate could be switched!
#271
xiuliren
closed
2 years ago
0
[enhancement] skip tasks with file lock
#270
xiuliren
opened
2 years ago
0
[feature] Mask operator should work with single chunk without corresponding mip level
#269
xiuliren
opened
2 years ago
0
change some default options, add option for test_time augmentation.
#268
xiuliren
closed
2 years ago
0
perf: faster PNG encode/decode
#267
william-silversmith
closed
2 years ago
0
Crop bbox
#266
xiuliren
closed
2 years ago
0
fix generate tasks when there is no input chunk
#265
xiuliren
closed
2 years ago
0
use python 3.8 for doc building
#264
xiuliren
closed
2 years ago
0
make ci work; upgrade to pandas 1.4.0
#263
xiuliren
closed
2 years ago
0
Post
#262
xiuliren
closed
2 years ago
0
Postsynapse
#261
xiuliren
closed
2 years ago
1
[feature] remove duplicated points in synapses
#260
xiuliren
opened
2 years ago
1
fixed a bug of post_synapse physical coordinate; rename tbars to pres…
#259
xiuliren
closed
3 years ago
0
detect T-bars and ingest to DVID server
#258
xiuliren
closed
3 years ago
0
[feature] a plugin to visualize all the point cloud of T-bar detection
#257
xiuliren
closed
2 years ago
1
[inference error] crop output patch and mask the output chunk
#256
xiuliren
closed
3 years ago
1
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