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seung-lab / cloud-volume

Read and write Neuroglancer datasets programmatically.
https://twitter.com/thundercloudvol
BSD 3-Clause "New" or "Revised" License
130 stars 45 forks source link

Test Anaconda Installation #118

Open william-silversmith opened 6 years ago

william-silversmith commented 6 years ago

Sven reported that anaconda builds were dying from a circular dependency.


Collecting cloud-volume
  Using cached https://files.pythonhosted.org/packages/96/39/dac6a9da64502176b00e445a591d1b6a23484fb585330073a4f965d16f97/cloud_volume-0.23.0-py2.py3-none-any.whl
Requirement already satisfied: Pillow>=4.2.1 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (5.1.0)
Requirement already satisfied: boto3>=1.4.7 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.7.32)
Requirement already satisfied: json5==0.5.1 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (0.5.1)
Requirement already satisfied: posix-ipc==1.0.4 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.0.4)
Requirement already satisfied: tenacity==4.4.0 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (4.4.0)
Requirement already satisfied: pytest>=3.3.1 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (3.6.0)
Requirement already satisfied: chardet==3.0.4 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (3.0.4)
Requirement already satisfied: protobuf>=3.3.0 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (3.5.2.post1)
Requirement already satisfied: backports-abc==0.5 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (0.5)
Collecting intern (from cloud-volume)
  Using cached https://files.pythonhosted.org/packages/c3/85/aeb89f2a4f0339af67b7ad8d7330780e67aab1360e6444336a824f14eb80/intern-0.9.6-py2.py3-none-any.whl
Requirement already satisfied: google-cloud==0.32.0 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (0.32.0)
Requirement already satisfied: python-jsonschema-objects==0.2.1 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (0.2.1)
Requirement already satisfied: requests>=2.18.4 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (2.18.4)
Requirement already satisfied: six==1.10.0 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.10.0)
Requirement already satisfied: tqdm in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (4.23.4)
Requirement already satisfied: urllib3[secure] in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.22)
Requirement already satisfied: google-auth>=1.0.2 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.5.0)
Requirement already satisfied: numpy>=1.13.3 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (1.14.3)
Requirement already satisfied: psutil==5.4.3 in ./anaconda3/lib/python3.6/site-packages (from cloud-volume) (5.4.3)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in ./anaconda3/lib/python3.6/site-packages (from boto3>=1.4.7->cloud-volume) (0.9.3)
Requirement already satisfied: s3transfer<0.2.0,>=0.1.10 in ./anaconda3/lib/python3.6/site-packages (from boto3>=1.4.7->cloud-volume) (0.1.13)
Requirement already satisfied: botocore<1.11.0,>=1.10.32 in ./anaconda3/lib/python3.6/site-packages (from boto3>=1.4.7->cloud-volume) (1.10.32)
Requirement already satisfied: monotonic>=0.6 in ./anaconda3/lib/python3.6/site-packages (from tenacity==4.4.0->cloud-volume) (1.5)
Requirement already satisfied: setuptools in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (39.2.0)
Requirement already satisfied: atomicwrites>=1.0 in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (1.1.5)
Requirement already satisfied: py>=1.5.0 in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (1.5.3)
Requirement already satisfied: pluggy<0.7,>=0.5 in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (0.6.0)
Requirement already satisfied: attrs>=17.4.0 in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (18.1.0)
Requirement already satisfied: more-itertools>=4.0.0 in ./anaconda3/lib/python3.6/site-packages (from pytest>=3.3.1->cloud-volume) (4.2.0)
Requirement already satisfied: mock in ./anaconda3/lib/python3.6/site-packages (from intern->cloud-volume) (2.0.0)
Requirement already satisfied: nose2 in ./anaconda3/lib/python3.6/site-packages (from intern->cloud-volume) (0.7.4)
Collecting blosc==1.4.4 (from intern->cloud-volume)
  Using cached https://files.pythonhosted.org/packages/6d/19/cc48ff2219cd479ab4c867eebaf865b32cbe67d8607c1f7b02c3e749ca2f/blosc-1.4.4.tar.gz
Requirement already satisfied: google-cloud-bigquery<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.0)
Requirement already satisfied: google-cloud-monitoring<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.1)
Requirement already satisfied: google-cloud-error-reporting<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.0)
Requirement already satisfied: google-cloud-language<1.1dev,>=1.0.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.0.2)
Requirement already satisfied: google-cloud-core<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.1)
Requirement already satisfied: google-cloud-runtimeconfig<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.1)
Requirement already satisfied: google-cloud-translate<1.4dev,>=1.3.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.3.1)
Requirement already satisfied: google-cloud-speech<0.31dev,>=0.30.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.30.0)
Requirement already satisfied: google-cloud-resource-manager<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.1)
Requirement already satisfied: google-cloud-vision<0.30dev,>=0.29.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.29.0)
Requirement already satisfied: google-cloud-spanner<0.30dev,>=0.29.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.29.0)
Requirement already satisfied: google-cloud-videointelligence<1.1dev,>=1.0.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.0.1)
Requirement already satisfied: google-cloud-dns<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.0)
Requirement already satisfied: google-cloud-bigquery-datatransfer<0.2dev,>=0.1.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.1.1)
Requirement already satisfied: google-api-core<0.2.0dev,>=0.1.2 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.1.4)
Requirement already satisfied: google-cloud-logging<1.5dev,>=1.4.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.4.0)
Requirement already satisfied: google-cloud-firestore<0.29dev,>=0.28.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.0)
Requirement already satisfied: google-cloud-container<0.2dev,>=0.1.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.1.1)
Requirement already satisfied: google-cloud-trace<0.18dev,>=0.17.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.17.0)
Requirement already satisfied: google-cloud-storage<1.7dev,>=1.6.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.6.0)
Requirement already satisfied: google-cloud-datastore<1.5dev,>=1.4.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (1.4.0)
Requirement already satisfied: google-cloud-bigtable<0.29dev,>=0.28.1 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.28.1)
Requirement already satisfied: google-cloud-pubsub<0.31dev,>=0.30.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud==0.32.0->cloud-volume) (0.30.1)
Collecting jsonschema==2.3.0 (from python-jsonschema-objects==0.2.1->cloud-volume)
  Using cached https://files.pythonhosted.org/packages/20/1c/52812523feebd744ac0e268224b5bae048b1559c88728f3628d169427947/jsonschema-2.3.0-py2.py3-none-any.whl
Requirement already satisfied: inflection==0.2.0 in ./anaconda3/lib/python3.6/site-packages (from python-jsonschema-objects==0.2.1->cloud-volume) (0.2.0)
Requirement already satisfied: pandocfilters==1.2 in ./anaconda3/lib/python3.6/site-packages (from python-jsonschema-objects==0.2.1->cloud-volume) (1.2)
Requirement already satisfied: Markdown==2.4 in ./anaconda3/lib/python3.6/site-packages (from python-jsonschema-objects==0.2.1->cloud-volume) (2.4)
Requirement already satisfied: idna<2.7,>=2.5 in ./anaconda3/lib/python3.6/site-packages (from requests>=2.18.4->cloud-volume) (2.6)
Requirement already satisfied: certifi>=2017.4.17 in ./anaconda3/lib/python3.6/site-packages (from requests>=2.18.4->cloud-volume) (2018.4.16)
Requirement already satisfied: pyOpenSSL>=0.14 in ./anaconda3/lib/python3.6/site-packages (from urllib3[secure]->cloud-volume) (18.0.0)
Requirement already satisfied: cryptography>=1.3.4 in ./anaconda3/lib/python3.6/site-packages (from urllib3[secure]->cloud-volume) (2.2.2)
Collecting ipaddress (from urllib3[secure]->cloud-volume)
  Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
Requirement already satisfied: rsa>=3.1.4 in ./anaconda3/lib/python3.6/site-packages (from google-auth>=1.0.2->cloud-volume) (3.4.2)
Requirement already satisfied: pyasn1-modules>=0.2.1 in ./anaconda3/lib/python3.6/site-packages (from google-auth>=1.0.2->cloud-volume) (0.2.1)
Requirement already satisfied: cachetools>=2.0.0 in ./anaconda3/lib/python3.6/site-packages (from google-auth>=1.0.2->cloud-volume) (2.1.0)
Requirement already satisfied: python-dateutil<3.0.0,>=2.1; python_version >= "2.7" in ./anaconda3/lib/python3.6/site-packages (from botocore<1.11.0,>=1.10.32->boto3>=1.4.7->cloud-volume) (2.7.3)
Requirement already satisfied: docutils>=0.10 in ./anaconda3/lib/python3.6/site-packages (from botocore<1.11.0,>=1.10.32->boto3>=1.4.7->cloud-volume) (0.14)
Requirement already satisfied: pbr>=0.11 in ./anaconda3/lib/python3.6/site-packages (from mock->intern->cloud-volume) (4.0.4)
Requirement already satisfied: coverage>=4.4.1 in ./anaconda3/lib/python3.6/site-packages (from nose2->intern->cloud-volume) (4.5.1)
Requirement already satisfied: google-resumable-media>=0.2.1 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-bigquery<0.29dev,>=0.28.0->google-cloud==0.32.0->cloud-volume) (0.3.1)
Requirement already satisfied: gapic-google-cloud-error-reporting-v1beta1<0.16dev,>=0.15.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-error-reporting<0.29dev,>=0.28.0->google-cloud==0.32.0->cloud-volume) (0.15.3)
Requirement already satisfied: google-gax<0.16dev,>=0.15.14 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-speech<0.31dev,>=0.30.0->google-cloud==0.32.0->cloud-volume) (0.15.16)
Requirement already satisfied: googleapis-common-protos[grpc]<2.0dev,>=1.5.2 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-vision<0.30dev,>=0.29.0->google-cloud==0.32.0->cloud-volume) (1.5.3)
Requirement already satisfied: grpc-google-iam-v1<0.12dev,>=0.11.4 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-spanner<0.30dev,>=0.29.0->google-cloud==0.32.0->cloud-volume) (0.11.4)
Requirement already satisfied: pytz in ./anaconda3/lib/python3.6/site-packages (from google-api-core<0.2.0dev,>=0.1.2->google-cloud==0.32.0->cloud-volume) (2018.4)
Requirement already satisfied: gapic-google-cloud-logging-v2<0.92dev,>=0.91.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-logging<1.5dev,>=1.4.0->google-cloud==0.32.0->cloud-volume) (0.91.3)
Requirement already satisfied: gapic-google-cloud-datastore-v1<0.16dev,>=0.15.0 in ./anaconda3/lib/python3.6/site-packages (from google-cloud-datastore<1.5dev,>=1.4.0->google-cloud==0.32.0->cloud-volume) (0.15.3)
Requirement already satisfied: asn1crypto>=0.21.0 in ./anaconda3/lib/python3.6/site-packages (from cryptography>=1.3.4->urllib3[secure]->cloud-volume) (0.24.0)
Requirement already satisfied: cffi>=1.7 in ./anaconda3/lib/python3.6/site-packages (from cryptography>=1.3.4->urllib3[secure]->cloud-volume) (1.11.5)
Requirement already satisfied: pyasn1>=0.1.3 in ./anaconda3/lib/python3.6/site-packages (from rsa>=3.1.4->google-auth>=1.0.2->cloud-volume) (0.4.3)
Requirement already satisfied: oauth2client<4.0dev,>=2.0.0 in ./anaconda3/lib/python3.6/site-packages (from gapic-google-cloud-error-reporting-v1beta1<0.16dev,>=0.15.0->google-cloud-error-reporting<0.29dev,>=0.28.0->google-cloud==0.32.0->cloud-volume) (3.0.0)
Requirement already satisfied: proto-google-cloud-error-reporting-v1beta1[grpc]<0.16dev,>=0.15.3 in ./anaconda3/lib/python3.6/site-packages (from gapic-google-cloud-error-reporting-v1beta1<0.16dev,>=0.15.0->google-cloud-error-reporting<0.29dev,>=0.28.0->google-cloud==0.32.0->cloud-volume) (0.15.3)
Requirement already satisfied: grpcio<2.0dev,>=1.0.2 in ./anaconda3/lib/python3.6/site-packages (from google-gax<0.16dev,>=0.15.14->google-cloud-speech<0.31dev,>=0.30.0->google-cloud==0.32.0->cloud-volume) (1.12.1)
Requirement already satisfied: ply==3.8 in ./anaconda3/lib/python3.6/site-packages (from google-gax<0.16dev,>=0.15.14->google-cloud-speech<0.31dev,>=0.30.0->google-cloud==0.32.0->cloud-volume) (3.8)
Requirement already satisfied: future<0.17dev,>=0.16.0 in ./anaconda3/lib/python3.6/site-packages (from google-gax<0.16dev,>=0.15.14->google-cloud-speech<0.31dev,>=0.30.0->google-cloud==0.32.0->cloud-volume) (0.16.0)
Requirement already satisfied: dill<0.3dev,>=0.2.5 in ./anaconda3/lib/python3.6/site-packages (from google-gax<0.16dev,>=0.15.14->google-cloud-speech<0.31dev,>=0.30.0->google-cloud==0.32.0->cloud-volume) (0.2.7.1)
Requirement already satisfied: proto-google-cloud-logging-v2[grpc]<0.92dev,>=0.91.3 in ./anaconda3/lib/python3.6/site-packages (from gapic-google-cloud-logging-v2<0.92dev,>=0.91.0->google-cloud-logging<1.5dev,>=1.4.0->google-cloud==0.32.0->cloud-volume) (0.91.3)
Requirement already satisfied: proto-google-cloud-datastore-v1[grpc]<0.91dev,>=0.90.3 in ./anaconda3/lib/python3.6/site-packages (from gapic-google-cloud-datastore-v1<0.16dev,>=0.15.0->google-cloud-datastore<1.5dev,>=1.4.0->google-cloud==0.32.0->cloud-volume) (0.90.4)
Requirement already satisfied: pycparser in ./anaconda3/lib/python3.6/site-packages (from cffi>=1.7->cryptography>=1.3.4->urllib3[secure]->cloud-volume) (2.18)
Requirement already satisfied: httplib2>=0.9.1 in ./anaconda3/lib/python3.6/site-packages (from oauth2client<4.0dev,>=2.0.0->gapic-google-cloud-error-reporting-v1beta1<0.16dev,>=0.15.0->google-cloud-error-reporting<0.29dev,>=0.28.0->google-cloud==0.32.0->cloud-volume) (0.11.3)
Building wheels for collected packages: blosc
  Running setup.py bdist_wheel for blosc ... error
  Complete output from command /home/svenmd/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-q3m81slx/blosc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-hyz4ftvs --python-tag cp36:
  SSE2 detected
  AVX2 detected
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.6
  creating build/lib.linux-x86_64-3.6/blosc
  copying blosc/toplevel.py -> build/lib.linux-x86_64-3.6/blosc
  copying blosc/version.py -> build/lib.linux-x86_64-3.6/blosc
  copying blosc/test.py -> build/lib.linux-x86_64-3.6/blosc
  copying blosc/__init__.py -> build/lib.linux-x86_64-3.6/blosc
  running build_ext
  building 'blosc.blosc_extension' extension
  creating build/temp.linux-x86_64-3.6
  creating build/temp.linux-x86_64-3.6/blosc
  creating build/temp.linux-x86_64-3.6/c-blosc
  creating build/temp.linux-x86_64-3.6/c-blosc/blosc
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/decompress
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/compress
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/dictBuilder
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/legacy
  creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/common
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c blosc/blosc_extension.c -o build/temp.linux-x86_64-3.6/blosc/blosc_extension.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  c-blosc/blosc/shuffle.c: In function 'blosc_get_cpu_features':
  c-blosc/blosc/shuffle.c:209:7: warning: variable 'zmm_state_enabled' set but not used [-Wunused-but-set-variable]
     int zmm_state_enabled = 0;
         ^
  c-blosc/blosc/shuffle.c: At top level:
  c-blosc/blosc/shuffle.c:297:33: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   static shuffle_implementation_t get_shuffle_implementation() {
                                   ^
  c-blosc/blosc/shuffle.c:354:6: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   void init_shuffle_implementation() {
        ^
  In file included from c-blosc/blosc/shuffle.c:12:0:
  c-blosc/blosc/shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
   static void shuffle_generic_inline(const size_t type_size,
               ^
  c-blosc/blosc/shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
   static void unshuffle_generic_inline(const size_t type_size,
               ^
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/lz4-1.7.2/lz4.c -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/lz4-1.7.2/lz4hc.c -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-sinksource.cc -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-sinksource.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
  gcc: error trying to exec 'cc1plus': execvp: No such file or directory
  error: command 'gcc' failed with exit status 1

  ----------------------------------------
  Failed building wheel for blosc
  Running setup.py clean for blosc
Failed to build blosc
nbformat 4.4.0 has requirement jsonschema!=2.5.0,>=2.4, but you'll have jsonschema 2.3.0 which is incompatible.
nbconvert 5.3.1 has requirement pandocfilters>=1.4.1, but you'll have pandocfilters 1.2 which is incompatible.
jupyterlab-launcher 0.10.5 has requirement jsonschema>=2.6.0, but you'll have jsonschema 2.3.0 which is incompatible.
Installing collected packages: blosc, intern, cloud-volume, jsonschema, ipaddress
  Running setup.py install for blosc ... error
    Complete output from command /home/svenmd/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-q3m81slx/blosc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-n1i6rcgq/install-record.txt --single-version-externally-managed --compile:
    SSE2 detected
    AVX2 detected
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.6
    creating build/lib.linux-x86_64-3.6/blosc
    copying blosc/toplevel.py -> build/lib.linux-x86_64-3.6/blosc
    copying blosc/version.py -> build/lib.linux-x86_64-3.6/blosc
    copying blosc/test.py -> build/lib.linux-x86_64-3.6/blosc
    copying blosc/__init__.py -> build/lib.linux-x86_64-3.6/blosc
    running build_ext
    building 'blosc.blosc_extension' extension
    creating build/temp.linux-x86_64-3.6
    creating build/temp.linux-x86_64-3.6/blosc
    creating build/temp.linux-x86_64-3.6/c-blosc
    creating build/temp.linux-x86_64-3.6/c-blosc/blosc
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/decompress
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/compress
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/dictBuilder
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/legacy
    creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.0.0/common
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c blosc/blosc_extension.c -o build/temp.linux-x86_64-3.6/blosc/blosc_extension.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    c-blosc/blosc/shuffle.c: In function 'blosc_get_cpu_features':
    c-blosc/blosc/shuffle.c:209:7: warning: variable 'zmm_state_enabled' set but not used [-Wunused-but-set-variable]
       int zmm_state_enabled = 0;
           ^
    c-blosc/blosc/shuffle.c: At top level:
    c-blosc/blosc/shuffle.c:297:33: warning: function declaration isn't a prototype [-Wstrict-prototypes]
     static shuffle_implementation_t get_shuffle_implementation() {
                                     ^
    c-blosc/blosc/shuffle.c:354:6: warning: function declaration isn't a prototype [-Wstrict-prototypes]
     void init_shuffle_implementation() {
          ^
    In file included from c-blosc/blosc/shuffle.c:12:0:
    c-blosc/blosc/shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
     static void shuffle_generic_inline(const size_t type_size,
                 ^
    c-blosc/blosc/shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
     static void unshuffle_generic_inline(const size_t type_size,
                 ^
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/lz4-1.7.2/lz4.c -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/lz4-1.7.2/lz4hc.c -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.7.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc -pthread -B /home/svenmd/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.7.2 -Ic-blosc/internal-complibs/zstd-1.0.0 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.0.0/common -Ic-blosc/internal-complibs/zstd-1.0.0 -I/home/svenmd/anaconda3/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-sinksource.cc -o build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-sinksource.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
    gcc: error trying to exec 'cc1plus': execvp: No such file or directory
    error: command 'gcc' failed with exit status 1

    ----------------------------------------
Command "/home/svenmd/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-q3m81slx/blosc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-n1i6rcgq/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-q3m81slx/blosc/```
william-silversmith commented 6 years ago

@sdorkenw I think this is limited to anaconda, I tried installing on a bare ubuntu docker instance and it seems to work.

william-silversmith commented 6 years ago

I tried installing cloud-volume using miniconda in a clean ubuntu docker. I was unable to reproduce this issue.

sdorkenw commented 6 years ago

All I can say is that this happens to me on a fresh Google Cloud Instance (Ubuntu 16.04) and anaconda.

william-silversmith commented 6 years ago

Fixed the tenacity python3.7 issue at least.

william-silversmith commented 5 years ago

Is this still happening?