search

seung-lab / connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
GNU Lesser General Public License v3.0
356 stars 42 forks source link

warning from numpy #69

Closed xiuliren closed 3 years ago

xiuliren commented 3 years ago

this is not a big issue, but it might create problems in the future. I just would like to keep a mark here, nothing urgent to fix.

Processing connected-components-3d-3.2.0.tar.gz
Writing /var/folders/gc/b6s140td6xdbfxdrsmkjtww80001lg/T/easy_install-wc89qksb/connected-components-3d-3.2.0/setup.cfg
Running connected-components-3d-3.2.0/setup.py -q bdist_egg --dist-dir /var/folders/gc/b6s140td6xdbfxdrsmkjtww80001lg/T/easy_install-wc89qksb/connected-components-3d-3.2.0/egg-di
st-tmp-c5t0i0lp
In file included from cc3d.cpp:645:
In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
/Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "
      "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
william-silversmith commented 3 years ago

Unfortunately, this is a known issue with cython. They claim it will be fixed in Cython 3 (the next release after 0.29) which should be released soon.

On Sun, Apr 18, 2021, 9:45 AM Jingpeng Wu @.***> wrote:

this is not a big issue, but it might create problems in the future. I just would like to keep a mark here, nothing urgent to fix.

Processing connected-components-3d-3.2.0.tar.gz Writing /var/folders/gc/b6s140td6xdbfxdrsmkjtww80001lg/T/easy_install-wc89qksb/connected-components-3d-3.2.0/setup.cfg Running connected-components-3d-3.2.0/setup.py -q bdist_egg --dist-dir /var/folders/gc/b6s140td6xdbfxdrsmkjtww80001lg/T/easy_install-wc89qksb/connected-components-3d-3.2.0/egg-di st-tmp-c5t0i0lp In file included from cc3d.cpp:645: In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /Users/jwu/opt/anaconda3/envs/wasp/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]

warning "Using deprecated NumPy API, disable it with " \

^ 1 warning generated.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/seung-lab/connected-components-3d/issues/69, or unsubscribe https://github.com/notifications/unsubscribe-auth/AATGQSOITROIA5CSKK2DGCLTJLO7NANCNFSM43EHTPFQ .

william-silversmith commented 3 years ago

Closing until cython 3.0 comes out.