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seung-lab / euclidean-distance-transform-3d

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
GNU General Public License v3.0
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Watershed transform? #27

Closed ma-sadeghi closed 4 years ago

ma-sadeghi commented 4 years ago

I know this might be out of the scope of your repo, but do you happen to work on writing your own implementation of watershed transform, similar to this repo for edt?

william-silversmith commented 4 years ago

I don't unfortunately. In my field, we use a specialization of watershed that deals with voxel affinitiy graphs. Jan Funkey wrote https://github.com/funkey/waterz which is based on earlier work by Aleksander Zlateski whom was previously in my lab. Does that help?

On Tue, Jun 2, 2020 at 5:29 PM Amin Sadeghi notifications@github.com wrote:

I know this might be out of the scope of your repo, but do you happen to work on writing your own implementation of watershed transform, similar to this repo for edt?

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ma-sadeghi commented 4 years ago

Sorry for the late reply, I forgot I hadn't replied back. That's great, I'll definitely look into waterz. Thanks!