seung-lab / igneous

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
GNU General Public License v3.0
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feat(SkeletonTask): compute cross sectional area #166

Closed william-silversmith closed 5 months ago

william-silversmith commented 5 months ago

Adds cross_sectional_area=True and cross_sectional_area_smoothing_window=1 to SkeletonTask.

As of this writing, the xs3d module kimimaro uses is too slow to do a dense calculation (think: 8+ hrs per a task) but is fast enough to do it for sparse neurons (thousands of times less work).