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seung-lab / igneous

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
GNU General Public License v3.0
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Image create command crashes for path including "." #168

Closed jakobtroidl closed 7 months ago

jakobtroidl commented 7 months ago

This is a minor problem, but I thought I share it since I spent my last hour on it. It seems like the igneous image create command crashes if there is a . in the filename of the .npy file. For example, this command throws an error message format not supported: 

igneous image create ./my.test.npy ./PRECOMPUTED_FOLDER --compress none

whereas this works

igneous image create ./my_test.npy ./PRECOMPUTED_FOLDER --compress none
jakobtroidl commented 7 months ago

Maybe to avoid future confusion this line could be updated to 

print("Format not supported: {}".format(ext))

I can submit a PR if you want @william-silversmith.

william-silversmith commented 7 months ago

Thank you for reporting this! I pushed a fix. I'm working on something skeleton related, but I'll push a new PyPI release soon.