william-silversmith
commented
3 years ago Hi Jacob,
This is pretty strange. psutil usually installs seamlessly. I can see you're using python37, but I'm not sure what OS this is (MacOS?). The error message you provided unfortunately doesn't contain enough information for me to understand what's going on. If you'd like a slightly more private way to send the full (anonymized) stack trace, you can email me at ws9 at princeton (deobfuscated of course).
JacobBumgarner
Hi there, Let me apologize in advance for my technical ineptitude. Hopefully this is a simple problem that you can help me figure out.
When I run "pip install kimimaro" in my terminal, I received a long error code that seems to be related to the installation of psutil.
"Pip show psutil" returns the following, indicating it's been installed successfully: Name: psutil Version: 5.8.0 Summary: Cross-platform lib for process and system monitoring in Python. Home-page: https://github.com/giampaolo/psutil Author: Giampaolo Rodola Author-email: g.rodola@gmail.com License: BSD Location: /Users/jacobbumgarner/opt/anaconda3/envs/micromap/lib/python3.7/site-packages Requires: Required-by: spyder Note: you may need to restart the kernel to use updated packages.
The error code I get when running "Pip install kimimaro" can be found below with personal info retracted:
ERROR: Command errored out with exit status 1: /Users/deleted/opt/anaconda3/envs/micromap/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/tx/deleted/T/pip-install-cwj2yufr/psutil_c0c9aad5fafe4d3eaeb57cc2ad6ab148/setup.py'"'"'; file='"'"'/private/var/folders/tx/deleted/T/pip-install-cwj2yufr/psutil_c0c9aad5fafe4d3eaeb57cc2ad6ab148/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/tx/deleted/T/pip-record-4tjv3kke/install-record.txt --single-version-externally-managed --compile --install-headers /Users/deleted/opt/anaconda3/envs/micromap/include/python3.7m/psutil Check the logs for full command output
I deleted some long numeric strings from the error, as I'm not sure what they represent and am unsure whether they should be published. If you need these for any reason, please let me know.
Thanks for your help, Jacob