Compatibility issue with Igneous' Skeletonization

seung-lab / kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

GNU General Public License v3.0

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Compatibility issue with Igneous' Skeletonization #88

Closed SanjeevRJ closed 2 months ago

SanjeevRJ commented 3 months ago

Hi,

I'm trying to use Igneous' skeletonization feature and I believe commit #87 is causing some compatibility issues between the two packages. There are some non-TEASAR related parameters that I think you can't set on the Igneous side such as anisotropy, which results in the following error TypeError: roll_invalidation_ball_inside_component() takes at least 6 positional arguments (3 given) when running Igneous' skeletonization. Are there any workarounds for this issue? Thanks!

william-silversmith commented 3 months ago

Oh hi Sanjeev! This is a problem that should have been fixed in the latest release. Try updating Kimimaro and see if that fixes it for you.

SanjeevRJ commented 3 months ago

Hi Will! Ah gotcha, I misinterpreted that commit as causing the issue instead of solving it. Thank you!