agate documentation

[sfregosi]

• [x] Check out what Taiki did for PAMpal
• [x] Decide quarto or vs rmd vs md - QUARTO
• [x] Created index page
• [x] set up and tested github action
• [x] Build outline of pages
• [ ] Populate pages...
  • [x] Finalize plots page
  • [ ] workflow pages
    • [x] download script
    • [x] survey planning track
    • [x] piloting
    • [ ] process positional data
    • [x] process acoustic data
  • [x] detailed configuration page
  • [x] make kml (add to survey planning page)
• [x] #41
• [ ] Add WISPR conversion config to config guide and add WISPR conversion instructions to conversion page (after completing #40 )
• [ ] #47
• [x] #58
• [ ] Add link to agate_test_data folder to repo's readme
• [ ] Make bold or better highlight on each page where it references what is REQUIRED in the configuration file for that page
• [ ] #65
• [x] #66

OUTLINE

• Home - has background, disclaimer, dependencies
• Get Started - download instructions, info on configuration files, basic download and extract params workflow
• Plots - examples and descriptions of different plotting functions
• Workflows - descriptions and links to each example workflow

[sfregosi]

Started transition to Quarto - lots of issues with github action for rendering...but working on it.

Ah! Got it to work. Issue was not with the folder structure with the .Rproj (having the documentation in a docs folder) but with having the github action apply to the root vs the docs folder!

[sfregosi]

Plots page started, needs to be filled in with screenshots, descriptions

[sfregosi]

Rather than a single workflow page - created individual pages for each workflow, and added those as checklist items to top section