is it available to predict segmental duplications

sfu-compbio / mrsfast

mrsFAST: micro-read substitution-only Fast Alignment Search Tool

http://sfu-compbio.github.io/mrsfast/

BSD 3-Clause "New" or "Revised" License

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is it available to predict segmental duplications #15

Closed AlisaGU closed 2 years ago

AlisaGU commented 2 years ago

Hi, A paper said mrsfast can predict segmental duplications based on read depth. However, I didn't find this function. Did I miss anything?

from the Supplementary Material of Great ape genetic diversity and population history

fhach commented 2 years ago

mrsFAST is an aligner, its output may be used to detect segmental duplication. I think they have analyzed read-depths from mapping files generated by mrsFAST.

If you are interested in segmental duplications, please check out our other tools for segmental duplications: https://github.com/vpc-ccg/sedef https://github.com/0xTCG/biser