Dear,
I created the SNP index based on the vcf file of dbSNP156.
An error occurs when performing SNP comparison:
mrsfast --search hg38.fa --seq ./test/rfx5.fa --threads 6 -e 100 --disable-sam-header --snp dbsnp156CommonERROR :
==> This version is compiled without any SSE4 optimization <==
# Threads: 6
# Error: 2 (full sensitivity)
*** buffer overflow detected ***: terminated
Aborted
My vcf file like this:
And snp index created successfully:
Pre-processing VCF file ...
Chromosomes: 1027
Valid SNP locations: 21066777
Reading SNP locations .......
Reformatting data ...
Creating output in dbsnp156Common
21066777 SNP locations registered successfully
I performed an operation on the vcf file. If the two candidate alleles of a site are both greater than 0.5%, then the two SNPs are split into two lines, like the following:
Dear, I created the SNP index based on the vcf file of dbSNP156. An error occurs when performing SNP comparison:
mrsfast --search hg38.fa --seq ./test/rfx5.fa --threads 6 -e 100 --disable-sam-header --snp dbsnp156Common
ERROR :My vcf file like this: And snp index created successfully:
I performed an operation on the vcf file. If the two candidate alleles of a site are both greater than 0.5%, then the two SNPs are split into two lines, like the following: