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sfu-compbio / mrsfast

mrsFAST: micro-read substitution-only Fast Alignment Search Tool
http://sfu-compbio.github.io/mrsfast/
BSD 3-Clause "New" or "Revised" License
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changes related to parameters & default files - v3.4.1 #4

Open calkan opened 5 years ago

calkan commented 5 years ago 
* Default output file is now (seqFile1)-output.sam(.gz) & default nohit file is (seqFile1)-output.nohit.fastq(.gz)
* No-hit FASTQ output is new also compressed when --outcomp parameter is used.
* mrsFAST now accepts -t as a short form for --threads.
calkan commented 5 years ago

there was a mistake in calling stripPath, which was not safe for seqFile1