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xolotl
A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️
https://go.brandeis.edu/xolotl
GNU General Public License v3.0
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improve xolotl object display in java-less windows
#540
sg-s
opened
3 years ago
0
getGatingFunctions should return vectorized versions of the gating functions
#539
sg-s
closed
3 years ago
0
documentation should talk about caching to speed up repeated runs
#538
sg-s
opened
3 years ago
1
xolotl should work in MATLAB online
#537
sg-s
closed
3 years ago
2
Lackluster organisation of data returned when output_type=1 with synapses
#536
sg-s
closed
4 years ago
2
xolotl.conductance does not parse "^" correctly
#535
sg-s
closed
4 years ago
0
rk4 solver returns NaNs sometimes
#534
sg-s
closed
4 years ago
1
Current units not consistent with output_type?
#533
JRS92
closed
4 years ago
4
xolotl should check the integreity of its own source before doing anything
#532
sg-s
closed
4 years ago
1
xolotl uses an ancient and non-performant C++ API
#531
sg-s
opened
4 years ago
0
broken link in docs
#530
sg-s
closed
3 years ago
1
Need to host linux and windows binaries
#529
sg-s
opened
4 years ago
1
xolotl does not return controller values when run with output_type>0
#528
sg-s
closed
4 years ago
1
reset does not seem to affect I_ext
#527
sg-s
closed
3 years ago
1
Better verbosity handling
#526
sg-s
closed
4 years ago
1
running in parallel is broken for mysterious reasons
#525
sg-s
closed
4 years ago
11
paths.cpplab should be programatically removed from the xolotl.prj file
#524
sg-s
closed
4 years ago
1
Serious bug: manipulating causes a seg fault
#523
sg-s
closed
4 years ago
3
Toolbox should have nicer internal links
#522
sg-s
closed
4 years ago
0
xolotl.uninstall doesn't actually work
#521
sg-s
closed
4 years ago
0
Package download ships with paths.cpplab, which breaks everything unless cache is rebuilt
#520
sg-s
closed
4 years ago
8
Is it possible to use a self-hosted runner to automate testing?
#519
sg-s
closed
3 years ago
0
What would it take to support adaptive time step integration?
#518
sg-s
opened
4 years ago
4
Documentation should take about the init() method
#517
sg-s
closed
4 years ago
0
Refactored mexing
#516
sg-s
closed
4 years ago
0
parallel code broken in refactored-mex branch
#515
sg-s
closed
4 years ago
1
Synapses can be accelerated by using LUTs
#514
sg-s
closed
4 years ago
0
No temperature sensitive in x.show in refactored mex branch
#513
sg-s
closed
3 years ago
1
Temperature-sensitive models behave differnetly in refactored mex branch
#512
sg-s
closed
4 years ago
0
There is something fundamentally wrong about how timescales are scaled in calcium mechs
#511
sg-s
closed
4 years ago
0
C++ code overhaul plan
#510
sg-s
closed
4 years ago
1
All components should have a init() method
#509
sg-s
closed
4 years ago
0
Objects are stored in memory unless clear all is run -- maybe exploit this to not rebuilt the xolotl tree everytime?
#508
sg-s
closed
4 years ago
1
remove all references to strlib.oval()
#507
sg-s
closed
4 years ago
0
x.show() does not respect temperature
#506
sg-s
closed
4 years ago
0
prinz-temperature channels are broken somehow
#505
sg-s
closed
4 years ago
1
x.show() plots in the wrong places
#504
sg-s
closed
4 years ago
0
Docs
#503
alec-hoyland
closed
4 years ago
0
Instantaneous kinetics flag
#502
alec-hoyland
closed
4 years ago
1
Soplata conductances fix
#501
alec-hoyland
closed
4 years ago
0
Add auto-completion to functions
#500
alec-hoyland
closed
4 years ago
3
Conductances with instantaneous kinetics
#499
alec-hoyland
closed
4 years ago
8
docstrings and info needs documentation
#498
sg-s
opened
4 years ago
1
show() needs to work with synapses
#497
sg-s
closed
4 years ago
2
The how-tos and online tutorials need to be tested against too
#496
sg-s
closed
3 years ago
6
Add corelib.assert to package
#495
alec-hoyland
closed
4 years ago
1
allow a --manipulate flag for x.show
#494
sg-s
closed
4 years ago
0
Need better error formatting for all assertsions
#493
sg-s
closed
4 years ago
0
manipulate broken
#492
sg-s
closed
4 years ago
0
Activation function plotting should use the real function instead of half-assed text parsing
#491
sg-s
closed
4 years ago
0
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