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sgibb / MALDIquant

Quantitative Analysis of Mass Spectrometry Data
https://strimmerlab.github.io/software/maldiquant/
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MALDI mass spec data format #78

Closed cathalgking closed 6 months ago

cathalgking commented 6 months ago

I have pre-processed MALDI Mass spec spatial proteomics data (Bruker company) to a table with x-y co-ordinates and m/z values (shown below). The raw data was a FeatureList file and a FullSpectra file. Can I use MALDIquant to analyse this data format? All I want to do is basic clustering of spots to get a list of significant m/z intensity values? image

sgibb commented 6 months ago

Thanks for considering MALDIquant for your analysis. However, MALDIquant is designed for the preprocessing. MALDIquant doesn't offers any functions for clustering etc.