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sgkit-dev
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bio2zarr
Convert bioinformatics file formats to Zarr
Apache License 2.0
23
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5
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Set single mp context at early import
#227
jeromekelleher
closed
1 month ago
2
Try to silence harmless warning on py 3.9 Mac
#226
jeromekelleher
closed
1 month ago
3
Run python3.9 on MacOS 13
#225
jeromekelleher
closed
2 months ago
1
Add basic example to CI so we can see output
#224
jeromekelleher
closed
2 months ago
1
Fixup msprime based tests when packages are fixed
#223
jeromekelleher
opened
2 months ago
0
Raise an error when too-large chunks are encountered
#222
jeromekelleher
closed
2 months ago
1
Document status of Python API
#221
jeromekelleher
closed
1 month ago
0
Returning a string from `.mkschema`
#220
hyanwong
closed
2 months ago
1
Inconsistent input/output argument order
#219
hyanwong
opened
2 months ago
6
Document example of editing schema
#218
jeromekelleher
closed
1 month ago
0
error converting a vcf
#217
mufernando
closed
2 months ago
3
Run CI on macos-14 (ARM)
#216
jeromekelleher
closed
2 months ago
5
Test on ARM macs
#215
jeromekelleher
closed
2 months ago
1
Override tqdm's default locks
#214
jeromekelleher
closed
2 months ago
1
Vcfparition final docs
#213
jeromekelleher
closed
2 months ago
1
Add support for multiple files to vcfpartition
#212
jeromekelleher
closed
1 month ago
2
Final vcfpartition version
#211
jeromekelleher
closed
2 months ago
1
Docs more docs
#210
jeromekelleher
closed
2 months ago
1
vcf2zarr leaks semaphore objects
#209
tomwhite
opened
2 months ago
16
Change project status to Beta
#208
jeromekelleher
closed
1 month ago
0
CD publish to pypi didn't trigger on release
#207
jeromekelleher
closed
2 months ago
4
Update CHANGELOG
#206
jeromekelleher
closed
2 months ago
1
Fix mac progress
#205
jeromekelleher
closed
2 months ago
1
Cli doc updates
#204
jeromekelleher
closed
2 months ago
1
Replace ``python -m bio2zarr vcf2zarr`` with ``python -m bio2zarr.vcf2zarr``?
#203
jeromekelleher
opened
2 months ago
2
Move cli reference
#202
jeromekelleher
closed
2 months ago
1
vcf2zarr progress bars aren't updated on Mac
#201
tomwhite
closed
2 months ago
9
Move readme to docs
#200
jeromekelleher
closed
2 months ago
1
Add coveralls
#199
benjeffery
closed
2 months ago
0
Refactor to use vcf2zarr module
#198
jeromekelleher
closed
2 months ago
1
More cast updates
#197
jeromekelleher
closed
2 months ago
1
Improve cast infrastructure
#196
jeromekelleher
closed
2 months ago
0
Refactor package structure
#195
jeromekelleher
closed
2 months ago
0
Minor tweaks to cast scripts
#194
jeromekelleher
closed
2 months ago
0
Docs stuff
#193
jeromekelleher
closed
2 months ago
1
First pass at executable tutorial
#192
jeromekelleher
closed
2 months ago
0
Some docs infrastructure
#191
jeromekelleher
closed
2 months ago
0
Fix missing f string
#190
benjeffery
closed
2 months ago
0
Schema mod tests
#189
jeromekelleher
closed
2 months ago
0
Could `dencode_init` return an upper memory use bound?
#188
benjeffery
closed
2 months ago
3
Add more logging for variant chunk memory
#187
jeromekelleher
closed
2 months ago
0
Improve encoding memory bound estimate
#186
jeromekelleher
opened
2 months ago
0
SVCR Local alleles
#185
jeromekelleher
opened
2 months ago
9
Improved info interface on encode/explode init
#184
jeromekelleher
closed
2 months ago
0
Detect VCF fields that would clobber VCF Zarr
#183
jeromekelleher
closed
2 months ago
0
Bump upload artefact to v4
#182
jeromekelleher
closed
2 months ago
0
CD warnings
#181
jeromekelleher
closed
2 months ago
2
Add explicit tests with indels
#180
jeromekelleher
closed
2 months ago
0
Implement mixed_ploidy support
#179
jeromekelleher
closed
2 months ago
7
Support one-based coordinates in explode/encode partition
#178
jeromekelleher
closed
2 months ago
0
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