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sgkit-dev
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bio2zarr
Convert bioinformatics file formats to Zarr
Apache License 2.0
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7
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Don't deploy on PRs
#137
benjeffery
closed
6 months ago
0
Distributed encode
#136
jeromekelleher
closed
6 months ago
1
Deploy docs
#135
benjeffery
closed
6 months ago
1
Deploy docs to github pages
#134
benjeffery
closed
6 months ago
0
Build docs in CI
#133
benjeffery
closed
6 months ago
0
Move lint workflow to the right place
#132
benjeffery
closed
6 months ago
0
Track missingness count for each field in ICF
#131
jeromekelleher
opened
6 months ago
0
Add initial docs system
#130
benjeffery
closed
6 months ago
2
Some refactoring of schema generation
#129
jeromekelleher
closed
6 months ago
1
Add lint github action
#128
benjeffery
closed
6 months ago
1
Add description from VCF header to arrays
#127
jeromekelleher
closed
6 months ago
0
Do not use bit shuffle for all 1 byte fields
#126
jeromekelleher
closed
6 months ago
0
No description in zarr arrays for VCF fields
#125
jeromekelleher
closed
6 months ago
0
Add description to zarr arrays for fixed fields
#124
jeromekelleher
closed
4 months ago
0
Reformat schema JSON
#123
jeromekelleher
closed
6 months ago
2
Fix test not updated in last commit
#122
jeromekelleher
closed
6 months ago
0
Trim empty regions
#121
jeromekelleher
closed
6 months ago
0
Empty partitions included in ICF, sometimes
#120
jeromekelleher
closed
6 months ago
0
Add pre-commit with ruff
#119
benjeffery
closed
6 months ago
1
Disable progress for dexplode-partition
#118
jeromekelleher
closed
6 months ago
0
Move mkdirs into per-partition processing
#117
jeromekelleher
closed
6 months ago
0
Fix ColumnSpec initialisation
#116
jeromekelleher
closed
6 months ago
0
Compressor settings ignored in input schema
#115
jeromekelleher
closed
6 months ago
0
dexplode_init fails with possible race condition
#114
benjeffery
closed
6 months ago
0
Add named dimensions for vcf numbers
#113
jeromekelleher
closed
6 months ago
0
Distributed encode
#112
jeromekelleher
closed
6 months ago
1
Update CHANGELOG for 0.0.4 release
#111
jeromekelleher
closed
6 months ago
0
Update defaults
#110
jeromekelleher
closed
6 months ago
0
Error on overlapping partitions
#109
benjeffery
closed
6 months ago
2
Parallel directory creation
#108
benjeffery
closed
6 months ago
1
Fix bug in memory budget handling
#107
jeromekelleher
closed
7 months ago
0
Test on vcfs with indels
#106
jeromekelleher
closed
6 months ago
0
Compressor arg
#105
jeromekelleher
closed
7 months ago
0
0.0.3 release upload failed
#104
jeromekelleher
closed
7 months ago
1
Cli refinements
#103
jeromekelleher
closed
7 months ago
0
Switch command argument order to put variable length VCFs at the end
#102
jeromekelleher
closed
5 months ago
6
Annotate click path arguments correctly
#101
jeromekelleher
closed
7 months ago
0
explode help text incorrect (ZARR PATH)
#100
jeromekelleher
closed
7 months ago
0
Prune tests from distribution
#99
jeromekelleher
closed
7 months ago
0
Add tests to catch unsupported alterations to the schema
#98
jeromekelleher
closed
5 months ago
0
Check for overlapping intervals in input VCFs
#97
jeromekelleher
closed
6 months ago
0
Explode partition + other ICF refactoring
#96
jeromekelleher
closed
7 months ago
0
More informative errors on IntermediateColumnarFormat missing files
#95
jeromekelleher
opened
7 months ago
0
Compressor not set for contig_length
#94
jeromekelleher
closed
6 months ago
0
Remove packbits default for bool
#93
jeromekelleher
closed
7 months ago
0
Add options for compressor in explode/dexplode-init
#92
jeromekelleher
closed
7 months ago
0
More explode refactoring
#91
jeromekelleher
closed
7 months ago
0
Refactor intermediate format stuff
#90
jeromekelleher
closed
7 months ago
0
Change ``dexplode_slice`` to ``dexplode_partition``?
#89
jeromekelleher
closed
7 months ago
2
Explode refactors
#88
jeromekelleher
closed
7 months ago
0
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