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sgkit-dev / sgkit-plink

NOW ARCHIVED! PLINK IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.
Apache License 2.0
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Figure out if Bed needs dummy axis vectors with full path to .bed file #17

Closed eric-czech closed 4 years ago

eric-czech commented 4 years ago

Some of this may be unnecessary now: https://github.com/pystatgen/sgkit-plink/blob/5ef6aac2424e88488fe8928dc1f753d3ea46fbe7/sgkit_plink/pysnptools.py#L47-L56

It looks like pysnptools might support not looking for fam/bim files.

eric-czech commented 4 years ago

@CarlKCarlK removed the need for anything like that in bed-reader (https://github.com/pystatgen/sgkit-plink/pull/30)