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sgkit-dev / sgkit

Scalable genetics toolkit
https://sgkit-dev.github.io/sgkit
Apache License 2.0
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VCF parser returning FILL instead of MISSING values #1192

Closed jeromekelleher closed 4 months ago

jeromekelleher commented 5 months ago

As described in #1190, we are currently returning int FILL values (-2) rather than missing data (-1) for INFO fields, and (I think) FORMAT fields as well.

I'm not sure if this generalises to Float and String fields as well, but I think it probably does.